Assay type 'Experimental Assay Type'

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Experimental Assay Type
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21 Assays visible to you, out of a total of 25

Assay - RNA extraction

Environmental stimuli on yeast

Performing RNA extraction of treated and control cultures

Submitter: David s

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Investigation - Heat stress

Study: Study - transcriptomic response

Organisms: No organisms

SOPs: SOPtest_1

Data files: No Data files

Snapshots: No snapshots

Created: 19th Jul 2022 at 08:19, Last updated: 19th Jul 2022 at 09:28

Assay - Library preparation

Environmental stimuli on yeast

Libraries were prepared following the recommendation of the sequencing facility

Submitter: David s

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Investigation - Heat stress

Study: Study - transcriptomic response

Organisms: No organisms

SOPs: SOPtest_2

Data files: No Data files

Snapshots: No snapshots

Created: 19th Jul 2022 at 08:21, Last updated: 19th Jul 2022 at 09:30

Assay - RNA sequencing

Environmental stimuli on yeast

The sequencing was performed by the external provider

Submitter: David s

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Investigation - Heat stress

Study: Study - transcriptomic response

Organisms: No organisms

SOPs: SOPtest_3

Data files: No Data files

Snapshots: No snapshots

Created: 19th Jul 2022 at 08:23, Last updated: 19th Jul 2022 at 09:32

Assay - DNA extraction

Mutant re-sequencing

This assay performs the DNA extraction

Submitter: David s

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Investigation - hi-per characterization

Study: Study - Mutant re-sequencing

Organisms: No organisms

SOPs: DNA extraction

Data files: No Data files

Snapshots: No snapshots

Created: 19th Jul 2022 at 09:51, Last updated: 19th Jul 2022 at 09:52

Assay - Library preparation

Mutant re-sequencing

The assay design is based on ENA's requirements

Submitter: David s

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Investigation - hi-per characterization

Study: Study - Mutant re-sequencing

Organisms: No organisms

SOPs: Library preparation

Data files: No Data files

Snapshots: No snapshots

Created: 19th Jul 2022 at 09:53, Last updated: 19th Jul 2022 at 09:54

Assay - Sequencing

Mutant re-sequencing

This assay follows the standard design for whole genome sequencing at the Institute. Samples were sent to the sequencing facility.

Submitter: David s

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Investigation - hi-per characterization

Study: Study - Mutant re-sequencing

Organisms: No organisms

SOPs: DNA sequencing

Data files: No Data files

Snapshots: No snapshots

Created: 19th Jul 2022 at 09:55, Last updated: 19th Jul 2022 at 09:55

Assay - RNA extraction

Environmental stimuli on yeast

Performing RNA extraction of chemically treated and control cultures

Submitter: David s

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Investigation - Chemical treatment

Study: Study - expression response

Organisms: No organisms

SOPs: SOPtest_1

Data files: No Data files

Snapshots: No snapshots

Created: 19th Jul 2022 at 13:15, Last updated: 19th Jul 2022 at 13:16

Assay - Library

Environmental stimuli on yeast

Libraries were prepared following the recommendation of the sequencing facility

Submitter: David s

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Investigation - Chemical treatment

Study: Study - expression response

Organisms: No organisms

SOPs: SOPtest_2

Data files: No Data files

Snapshots: No snapshots

Created: 19th Jul 2022 at 13:18, Last updated: 19th Jul 2022 at 13:19

Assay - RNA sequencing

Environmental stimuli on yeast

The sequencing was performed by the external provider

Submitter: David s

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Investigation - Chemical treatment

Study: Study - expression response

Organisms: No organisms

SOPs: SOPtest_3

Data files: No Data files

Snapshots: No snapshots

Created: 19th Jul 2022 at 13:20, Last updated: 19th Jul 2022 at 13:21

Nucleic acid extraction

Bob's PhD project

No description specified

Submitter: Bob Bob

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Bob's investigation

Study: Arabidopsis thaliana

Organisms: No organisms

SOPs: Nucleic acid extraction

Data files: No Data files

Snapshots: No snapshots

Created: 4th Nov 2022 at 08:56, Last updated: 4th Nov 2022 at 15:37

Library prep

Bob's PhD project

No description specified

Submitter: Bob Bob

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Bob's investigation

Study: Arabidopsis thaliana

Organisms: No organisms

SOPs: Library prep

Data files: No Data files

Snapshots: No snapshots

Created: 4th Nov 2022 at 09:01, Last updated: 4th Nov 2022 at 15:38

Sequencing

Bob's PhD project

No description specified

Submitter: Bob Bob

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Bob's investigation

Study: Arabidopsis thaliana

Organisms: No organisms

SOPs: Nucleic acid sequencing

Data files: No Data files

Snapshots: No snapshots

Created: 4th Nov 2022 at 09:05, Last updated: 4th Nov 2022 at 15:38

DNA Extraction

ISA ENA export

Extraction of DNA for sequencing

Submitter: Alice Alice

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Test_BioHackathon_Investigation

Study: Test_study

Organisms: No organisms

SOPs: Nucleic acid extraction

Data files: No Data files

Snapshots: No snapshots

Created: 6th Nov 2022 at 08:28, Last updated: 6th Nov 2022 at 08:29

Library preparation

ISA ENA export

No description specified

Submitter: Alice Alice

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Test_BioHackathon_Investigation

Study: Test_study

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 6th Nov 2022 at 08:31, Last updated: 6th Nov 2022 at 08:33

DNA sequencing

ISA ENA export

No description specified

Submitter: Alice Alice

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Test_BioHackathon_Investigation

Study: Test_study

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 6th Nov 2022 at 08:34, Last updated: 6th Nov 2022 at 08:35

DNA extraction

ISA ENA export

No description specified

Submitter: Alice Alice

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Test_investigation_biohackathon_2

Study: test_yeast_wgs

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 6th Nov 2022 at 09:56, Last updated: 6th Nov 2022 at 10:02

Library preparation

ISA ENA export

No description specified

Submitter: Alice Alice

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Test_investigation_biohackathon_2

Study: test_yeast_wgs

Organisms: No organisms

SOPs: Library prep

Data files: No Data files

Snapshots: No snapshots

Created: 6th Nov 2022 at 10:02, Last updated: 6th Nov 2022 at 10:05

DNA sequencing

ISA ENA export

No description specified

Submitter: Alice Alice

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Test_investigation_biohackathon_2

Study: test_yeast_wgs

Organisms: No organisms

SOPs: Nucleic acid sequencing

Data files: No Data files

Snapshots: No snapshots

Created: 6th Nov 2022 at 10:06, Last updated: 6th Nov 2022 at 10:07

File level metadata (data level 1)

Spatial proteomics use case

Raw files without any processing are level 1

Submitter: Parul Tewatia

Assay type: Experimental Assay Type

Technology type: Imaging

Investigation: pheno cycler reports

Study: phenocycler use case 1

Organisms: No organisms

SOPs: 1 hidden item

Data files: No Data files

Snapshots: No snapshots

Created: 22nd Nov 2022 at 14:36

dna extraction tomato

Bob's PhD project

No description specified

Submitter: Bob Bob

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Bob's other investigation

Study: Tomato

Organisms: No organisms

SOPs: 1 hidden item

Data files: No Data files

Snapshots: No snapshots

Created: 23rd Nov 2022 at 20:56

library prep pool

Bob's PhD project

No description specified

Submitter: Bob Bob

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Bob's other investigation

Study: Tomato

Organisms: No organisms

SOPs: 1 hidden item

Data files: No Data files

Snapshots: No snapshots

Created: 23rd Nov 2022 at 21:04